第Xa因子の活性部位は4つのサブポケットから成り、S1, S2, S3, S4と呼ばれている。S1サブポケットは基質の選択性や基質との結合を担う部位である。S2サブポケットは小さく浅い部分であり、形態はよくわかっていないが、S4と一体化するらしい。S3サブポケットはS1の辺縁にあり、溶媒に対して露出している。S4サブポケットには3つのリガンド結合部位があり、"hydrophobic box", "cationic hole" および the water site である。
^Hoffman M; Monroe MM (2007). “Coagulation 2006: A Modern View of Hemostasis”. Hematology and Oncology Clinics of North America21 (1): 1–11. doi:10.1016/j.hoc.2006.11.004. PMID17258114.
^Golan, D. E. (2012). Principles of Pharmacology The Pathophysiologic Basis of Drug Therapy. Philadelphia: Lippincott Williams & Wilkins. p. 387. ISBN978-1-4511-1805-6
^Broze, G J; Warren L A; Novotny W F; Higuchi D A; Girard J J; Miletich J P (Feb 1988). “The lipoprotein-associated coagulation inhibitor that inhibits the factor VII-tissue factor complex also inhibits factor Xa: insight into its possible mechanism of action”. Blood (UNITED STATES) 71 (2): 335–43. ISSN0006-4971. PMID3422166.
関連図書
Cooper DN, Millar DS, Wacey A (1997). “Inherited factor X deficiency: molecular genetics and pathophysiology”. Thromb. Haemost.78 (1): 161–72. PMID9198147.
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Krishnaswamy S (1990). “Prothrombinase complex assembly. Contributions of protein-protein and protein-membrane interactions toward complex formation”. J. Biol. Chem.265 (7): 3708–18. PMID2303476.
España F, Berrettini M, Griffin JH (1989). “Purification and characterization of plasma protein C inhibitor”. Thromb. Res.55 (3): 369–84. doi:10.1016/0049-3848(89)90069-8. PMID2551064.
Jagadeeswaran P, Reddy SV, Rao KJ (1990). “Cloning and characterization of the 5' end (exon 1) of the gene encoding human factor X”. Gene84 (2): 517–9. doi:10.1016/0378-1119(89)90529-5. PMID2612918.
Reddy SV, Zhou ZQ, Rao KJ (1989). “Molecular characterization of human factor XSan Antonio”. Blood74 (5): 1486–90. PMID2790181.
Kaul RK, Hildebrand B, Roberts S, Jagadeeswaran P (1986). “Isolation and characterization of human blood-coagulation factor X cDNA”. Gene41 (2–3): 311–4. doi:10.1016/0378-1119(86)90112-5. PMID3011603.
Broze GJ, Warren LA, Novotny WF (1988). “The lipoprotein-associated coagulation inhibitor that inhibits the factor VII-tissue factor complex also inhibits factor Xa: insight into its possible mechanism of action”. Blood71 (2): 335–43. PMID3422166.
Gilgenkrantz S, Briquel ME, André E (1986). “Structural genes of coagulation factors VII and X located on 13q34”. Ann. Genet.29 (1): 32–5. PMID3487272.
Leytus SP, Foster DC, Kurachi K, Davie EW (1986). “Gene for human factor X: a blood coagulation factor whose gene organization is essentially identical with that of factor IX and protein C”. Biochemistry25 (18): 5098–102. doi:10.1021/bi00366a018. PMID3768336.
McMullen BA, Fujikawa K, Kisiel W (1983). “Complete amino acid sequence of the light chain of human blood coagulation factor X: evidence for identification of residue 63 as beta-hydroxyaspartic acid”. Biochemistry22 (12): 2875–84. doi:10.1021/bi00281a016. PMID6871167.
Marchetti G, Castaman G, Pinotti M (1995). “Molecular bases of CRM+ factor X deficiency: a frequent mutation (Ser334Pro) in the catalytic domain and a substitution (Glu102Lys) in the second EGF-like domain”. Br. J. Haematol.90 (4): 910–5. doi:10.1111/j.1365-2141.1995.tb05214.x. PMID7669671.
Morgenstern KA, Sprecher C, Holth L (1994). “Complementary DNA cloning and kinetic characterization of a novel intracellular serine proteinase inhibitor: mechanism of action with trypsin and factor Xa as model proteinases”. Biochemistry33 (11): 3432–41. doi:10.1021/bi00177a037. PMID8136380.
Inoue K, Morita T (1993). “Identification of O-linked oligosaccharide chains in the activation peptides of blood coagulation factor X. The role of the carbohydrate moieties in the activation of factor X”. Eur. J. Biochem.218 (1): 153–63. doi:10.1111/j.1432-1033.1993.tb18361.x. PMID8243461.
Padmanabhan K, Padmanabhan KP, Tulinsky A (1993). “Structure of human des(1-45) factor Xa at 2.2 A resolution”. J. Mol. Biol.232 (3): 947–66. doi:10.1006/jmbi.1993.1441. PMID8355279.
Sinha U, Wolf DL (1993). “Carbohydrate residues modulate the activation of coagulation factor X”. J. Biol. Chem.268 (5): 3048–51. PMID8428982.
PDBギャラリー
1c5m: STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR
1ezq: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR128515
1f0r: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR208815
1f0s: Crystal Structure of Human Coagulation Factor XA Complexed with RPR208707
1fax: COAGULATION FACTOR XA INHIBITOR COMPLEX
1fjs: CRYSTAL STRUCTURE OF THE INHIBITOR ZK-807834 (CI-1031) COMPLEXED WITH FACTOR XA
1g2l: FACTOR XA INHIBITOR COMPLEX
1g2m: FACTOR XA INHIBITOR COMPLEX
1hcg: STRUCTURE OF HUMAN DES(1-45) FACTOR XA AT 2.2 ANGSTROMS RESOLUTION
1ioe: Human coagulation factor Xa in complex with M55532
1iqe: Human coagulation factor Xa in complex with M55590
1iqf: Human coagulation factor Xa in complex with M55165
1iqg: Human coagulation factor Xa in complex with M55159
1iqh: Human coagulation factor Xa in complex with M55143
1iqi: Human coagulation factor Xa in complex with M55125
1iqj: Human coagulation factor Xa in complex with M55124
1iqk: Human coagulation factor Xa in complex with M55113
1iql: Human coagulation factor Xa in complex with M54476
1iqm: Human coagulation factor Xa in complex with M54471
1iqn: Human coagulation factor Xa in complex with M55192
1ksn: Crystal Structure of Human Coagulation Factor XA Complexed with FXV673
1kye: Factor Xa in complex with (R)-2-(3-adamantan-1-yl-ureido)-3-(3-carbamimidoyl-phenyl)-N-phenethyl-propionamide
1lpg: CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 79.
1lpk: CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 125.
1lpz: CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 41.
1lqd: CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 45.
1mq5: Crystal Structure of 3-chloro-N-[4-chloro-2-[[(4-chlorophenyl)amino]carbonyl]phenyl]-4-[(4-methyl-1-piperazinyl)methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa
1mq6: Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa
1nfu: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR132747
1nfw: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR209685
1nfx: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR208944
1nfy: CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH RPR200095
1p0s: Crystal Structure of Blood Coagulation Factor Xa in Complex with Ecotin M84R
1v3x: Factor Xa in complex with the inhibitor 1-[6-methyl-4,5,6,7-tetrahydrothiazolo(5,4-c)pyridin-2-yl] carbonyl-2-carbamoyl-4-(6-chloronaphth-2-ylsulphonyl)piperazine
1wu1: Factor Xa in complex with the inhibitor 4-[(5-chloroindol-2-yl)sulfonyl]-2-(2-methylpropyl)-1-[[5-(pyridin-4-yl) pyrimidin-2-yl]carbonyl]piperazine
1xka: FACTOR XA COMPLEXED WITH A SYNTHETIC INHIBITOR FX-2212A,(2S)-(3'-AMIDINO-3-BIPHENYLYL)-5-(4-PYRIDYLAMINO)PENTANOIC ACID
1xkb: FACTOR XA COMPLEXED WITH A SYNTHETIC INHIBITOR FX-2212A,(2S)-(3'-AMIDINO-3-BIPHENYLYL)-5-(4-PYRIDYLAMINO)PENTANOIC ACID
1z6e: Crystal Structure of Factor Xa complexed to Razaxaban
2bmg: CRYSTAL STRUCTURE OF FACTOR XA IN COMPLEX WITH 50
2boh: CRYSTAL STRUCTURE OF FACTOR XA IN COMPLEX WITH COMPOUND ""1""
2bok: FACTOR XA - CATION
2bq6: CRYSTAL STRUCTURE OF FACTOR XA IN COMPLEX WITH 21
2bq7: CRYSTAL STRUCTURE OF FACTOR XA IN COMPLEX WITH 43
2bqw: CRYSTAL STRUCTURE OF FACTOR XA IN COMPLEX WITH COMPOUND 45
2cji: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2d1j: Factor Xa in complex with the inhibitor 2-[[4-[(5-chloroindol-2-yl)sulfonyl]piperazin-1-yl] carbonyl]thieno[3,2-b]pyridine n-oxide
2fzz: Factor Xa in complex with the inhibitor 1-(3-amino-1,2-benzisoxazol-5-yl)-6-(2'-(((3r)-3-hydroxy-1-pyrrolidinyl)methyl)-4-biphenylyl)-3-(trifluoromethyl)-1,4,5,6-tetrahydro-7h-pyrazolo[3,4-c]pyridin-7-one
2g00: Factor Xa in complex with the inhibitor 3-(6-(2'-((dimethylamino)methyl)-4-biphenylyl)-7-oxo-3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridin-1-yl)benzamide
2gd4: Crystal Structure of the Antithrombin-S195A Factor Xa-Pentasaccharide Complex
2h9e: Crystal Structure of FXa/selectide/NAPC2 ternary complex
2j2u: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2j34: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2j38: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2j4i: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2j94: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2j95: CRYSTAL STRUCTURE OF A HUMAN FACTOR XA INHIBITOR COMPLEX
2uwl: SELECTIVE AND DUAL ACTION ORALLY ACTIVE INHIBITORS OF THROMBIN AND FACTOR XA
2uwo: SELECTIVE AND DUAL ACTION ORALLY ACTIVE INHIBITORS OF THROMBIN AND FACTOR XA
2uwp: FACTOR XA INHIBITOR COMPLEX
外部リンク
The MEROPS online database for peptidases and their inhibitors: S01.216