Ofira is the son of the late Charles Ofria,[3] who developed the first fully integrated shop management program for the automotive repair industry. He attended Stuyvesant High School and graduated from Ward Melville High School in 1991. He earned a B.S. in Computer Science, Pure Mathematics, and Applied Mathematics from Stony Brook University in 1994. He completed a Ph.D. in Computation and Neural Systems at the California Institute of Technology in 1999.[4]
Career
His research focuses on the relationship between computer science and Darwinian evolution. He is one of the original designers of Avida, an artificial life software platform used to study the evolutionary biology of self-replicating digital organisms.[5] Avida was initially developed at Caltech in 1993 by Ofria, Chris Adami and C. Titus Brown and remains under active development in his Digital Evolution Lab at Michigan State University.
Clune J, Pennock RT, Ofria C, Lenski RE (2012) Ontogeny tends to recapitulate phylogeny in digital organisms" The American Naturalist 180: E54–E63. (pdf)
Clune J, Goldsby HJ, Ofria C, and Pennock RT (2011) Selective pressures for accurate altruism targeting: Evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory. Proceedings of the Royal Society. 278: 666-674. (PDF)
Clune J, Stanley KO, Pennock RT, Ofria C (2011) On the performance of indirect encoding across the continuum of regularity. IEEE Transactions on Evolutionary Computation. 15(3): 346-367. (PDF)
Clune J, Misevic D, Ofria C, Lenski RE, Elena SF, and Sanjuán R. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes[11]
Ofria C, Huang W and Torng E. On the gradual evolution of complexity and the sudden emergence of complex features[12]
Elena SF, Wilke CO, Ofria C, and Lenski RE. Effects of population size and mutation rate on the evolution of mutational robustness[13]
Ostrowski E, Ofria C, and Lenski RE, Ecological specialization and adaptive decay in digital organisms[14]
Lenski RE, Barrick JE, Ofria C. Balancing Robustness and Evolvability[15]
Misevic D, Ofria C, and Lenski RE. Sexual reproduction reshapes the genetic architecture of digital organisms[16]
Publications on Avida
R. E. Lenski, C. Ofria, T. C. Collier, C. Adami (1999). Genomic Complexity, Robustness, and Genetic Interactions in Digital Organisms. Nature400:661-664. Abstract
C. Adami, C. Ofria, and T.C. Collier (2000). Evolution of biological complexity. "Proceedings of the National Academy of Sciences" 97:4463-4468. Abstract
C. O. Wilke, J. L. Wang, C. Ofria, R. E. Lenski, and C. Adami (2001). Evolution of Digital Organisms at High Mutation Rate Leads To Survival of the Flattest. Nature412:331-333 Abstract.
S.S. Chow, C.O. Wilke, C. Ofria, R. E. Lenski, and C. Adami (2004). Adaptive Radiation from Resource Competition in Digital Organisms. Science305:84-86 Abstract.
^Ofria, Charles; Huang, Wei; Torng, Eric (2007). "On the Gradual Evolution of Complexity and the Sudden Emergence of Complex Features". Artificial Life. 14 (3): 255–263. doi:10.1162/artl.2008.14.3.14302. PMID18489251. S2CID2010637.
