A teams swap de facto took place when FC Olimpik Kirovohrad was renamed into FC Zirka Kirovohrad and reorganized. Previously in 2007 both Olimpik and Zirka played in the Amateur League. Following reorganization Olimpik continued its participation at amateur level, while Zirka started to play at professional level.
Nyva-Svitanok Vinnytsia renamed themselves prior to the start of the season to Nyva Vinnytsia.
FC Podillya-Khmelnytskyi Khmelnytskyi renamed themselves to Dynamo Khmelnytskyi on March 2, 2009 (during the season).
FC Yavir Krasnopillya changed their name to FC Sumy on September 11, 2008 (during the season).
Withdrawn (expelled) teams
FC Dynamo-3 Kyiv withdrew out of courtesy before the start of the season to allow MFK Mykolaiv to enter the competition.
FC Enerhiya Yuzhnoukrainsk withdrew from the PFL before the start of the season citing financial difficulties.
FC Desna-2 Chernihiv did not arrive On October 25, 2008 for the match against their opponent FC Knjazha-2 Schaslyve and subsequently withdrew from the PFL on October 29, 2008.
^Nyva Vinnytsia renamed themselves from Nyva-Svitanok prior to the start of the season
^FC Dnipro Cherkasy deducted 6 points by the Ukrainian Football Federation. Three points on November 2, 2008 and three points on March 26, 2009. The club failed to arrive for their 29th and 30th Round games and subsequently were expelled from the competition by the PFL.[2]
^FC Podillya-Khmelnytskyi renamed themselves to Dynamo Khmelnytskyi on March 2, 2009.[3]
^MFK Mykolaiv were readmitted into the PFL after dissolving at the end of the Persha Liha 2007–08 season at the expense of FC Dynamo-3 Kyiv who withdrew from the competition
^FC Korosten deducted 3 points by the Ukrainian Football Federation on March 26, 2009. After not arriving for their 22nd-round game against Veres Rivne, the PFL expelled FC Korosten from the professional leagues.[4]
Withdrawn teams
Desna-2 Chernihiv
On October 25, 2008 FC Desna-2 Chernihiv did not arrive for the match against their opponent FC Knjazha-2 Schaslyve[5] and subsequently withdrew from the PFL on October 29, 2008. The PFL annulled all their results from the competition and adjusted the standings.[6]Desna-2 Chernihiv had a record of 2 wins, 1 draw and 12 losses scoring 7 goals and having 24 goals scored against them.
Obolon-2 Kyiv
Obolon-2 withdrew after the winter-break.[7]Obolon-2 Kyiv after 20 games had a record of 5 wins, 4 draws and 11 losses scoring 20 goals and having 31 goals scored against them and were in 16th place in the standings.
Knyazha-2 Schaslyve
Knyazha-2 withdrew after the winter-break.[7]FC Knjazha-2 Schaslyve after 20 games had a record of 4 wins, 2 draws and 14 losses scoring 15 goals and having 35 goals scored against them and were in 17th place in the standings.
Nafkom Brovary
Nafkom withdrew after the season completed failing to receive a professional license.[8] Most of its players joined Nyva Vinnytsia.
Expelled teams
FC Korosten
FC Korosten was expelled from the PFL after the 22nd round for not arriving to a scheduled game for the second time in the 2008–09 season.[4]FC Korosten after 21 games had a record of 8 wins, 2 draws and 11 losses scoring 24 goals and having 36 goals scored against them and were in 11th place in the standings.
Dnipro Cherkasy
Dnipro were expelled from the competition after the 28th round. The club failed to arrive for their 29th and 30th-round games.[2]Dnipro Cherkasy after 27 games had a record of 17 wins, 5 draws and 5 losses scoring 37 goals and having 14 scored against them and were in 3rd place in the standings.
^Prior to the start of the season FC Olimpik Kirovohrad changed back its name to Zirka, and Zirka that participated in amateur competitions became Olimpik.
^ abcFC Tytan Donetsk, FC Shakhtar Sverdlovsk, and FC Hirnyk Kryvyi Rih deducted three points on June 18, 2009.[9]
^ abcdFC Arsenal Kharkiv, FC Hirnyk Kryvyi Rih, FC Dnipro-75 Dnipropetrovsk, and FC Sumy were deducted three points for non-paying the participation fees; FC Hirnyk Kryvyi Rih, FC Dnipro-75 Dnipropetrovsk, and FC Sumy were deducted additional three points for non-paying the participation fees for the second half of the season. The decision was officially declared by the Disciplinary Committee of PFL on May 28, 2009[10]
^FC Kremin Kremenchuk deducted 3 points by the Ukrainian Football Federation March 26, 2008
^FC Yavir Krasnopillya changed their name to FC Sumy on September 11, 2008
Withdrawn teams
PFC Sevastopol-2 Sevastopol
PFC Sevastopol-2 withdrew after the winter-break.[11]PFC Sevastopol-2 Sevastopol after 21 games had a record of 2 wins, 4 draws and 15 losses scoring 17 goals and having 39 goals scored against them and were in 17th place in the standings.
Arsenal Kharkiv
Arsenal withdrew after the season completed failing to receive a professional license.[8]
Tytan Donetsk
Tytan failed to pay license fees for the next season and subsequently the PFL withdrew their professional status in the league.[8]
^17 CMS stands for Central Municipal Stadium, the name of a stadium that doesn't carry any official names, and followed by the city's name where the stadium is located. Usually such stadiums are the property of the city with a generic name "Tsentralnyi" (Central, in Ukrainian)