The 2000 Russian Second Division was the ninth edition of the Russian Second Division. There were 6 zones with 107 teams starting the competition (one was excluded before the end of the season).
Source: RSSSF (A) Advance to a further round; (R) Relegated Notes:
^ abFC Severstal Cherepovets and FC Pskov promoted from the Russian Amateur Football League.
^ abFC Severstal Cherepovets was awarded a 3-0 victory in an away game against FC Saturn-d Ramenskoye (after Severstal won the game 2-0) because Vitali Veselov was not eligible to play for Saturn-d after being sent off during the main FC Saturn Ramenskoye team game.
^ abcdeFC Torpedo-2 Moscow, FC Zenit-2 St. Petersburg, FC Lokomotiv-2 Moscow, PFC CSKA-2 Moscow, FC Spartak-2 Moscow, FC Dynamo-2 Moscow and FC Saturn-d Ramenskoye moved to the newly reintroduced Russian Premier League reserves competition in 2001.
^FC Volochanin Vyshny Volochyok renamed to FC Volochanin-89.
^ abFC Spartak-2 Moscow was awarded a 3-0 victory in an away game against FC Lokomotiv-2 Moscow (after Spartak-2 lost the game 0-2) because Igor Cherevchenko was not eligible to play for Lokomotiv-2 after being sent off during the main FC Lokomotiv Moscow team game.
Source: RSSSF (A) Advance to a further round Notes:
^FC Lotto-MKM Moscow was called FC Moskabelmet Moscow in 1999 and did not participate in any national-level competitions in that year.
^FC Krasnoznamensk promoted from the Russian Amateur Football League where it played as FC Krasnoznamensk-Selyatino Krasnoznamensk in 1999.
^ abFC Krasnoznamensk was awarded a 3-0 victory in their home game against FC Yelets that Krasnoznamensk won 1-0 as Yelets fielded an ineligible player.
^FC Spartak Ryazan renamed to FC Ryazan-Agrokomplekt Ryazan in October.
^FC Yelets promoted from the Russian Amateur Football League.
Source: RSSSF (A) Advance to a further round; (R) Relegated Notes:
^ abFC Dynamo Stavropol was awarded a 3-0 victory in their home game against FC Nart Nartkala that Dynamo won 1-0 as Nart fielded an ineligible player.
^FC Spartak-Kavkaztransgaz Izobilny promoted from the Amateur Football League, where it played in 1999 as FC Signal Izobilny.
^FC Sudostroitel Astrakhan promoted from the Amateur Football League.
^FC Rostselmash-2 Rostov-on-Don moved to the newly reintroduced Russian Premier League reserves competition in 2001.
^FC Iriston Vladikavkaz did not participate in any national-level competition in 2001.
^FC Chernomorets-d Novorossiysk included in the league without participating in national-level competitions in 1999. They moved to the newly reintroduced Russian Premier League reserves competition in 2001.
Source: RSSSF (A) Advance to a further round; (R) Relegated Notes:
^FC Lada-Simbirsk Dimitrovgrad renamed to Lada-Energiya.
^ abFC Olimpiya Volgograd and FC Khopyor Balashov promoted from the Amateur Football League.
^FC Krylya Sovetov-2 Samara was admitted into the division without participating in any national-level competitions in 1999. They moved to the newly reintroduced Russian Premier League reserves competition in 2001.
Top goalscorers
26 goals
Anton Khazov (FC Torpedo-Viktoriya Nizhny Novgorod)
Source: RSSSF (A) Advance to a further round Notes:
^FC Chkalovets-Olimpik Novosibirsk promoted from the Amateur Football League. The history of FC Chkalovets Novosibirsk that participated in the 1999 Second Division was technically inherited by FC Chkalovets-1936 Novosibirsk that entered Amateur Football League in 2000.
^FC Reformatsiya Abakan dropped out of the league after playing 9 games and gaining 7 points. They did not participate in any national-level competitions in 2001.
3–3 on aggregate, Severstal won on away goals rule and was promoted to the 2001 Russian First Division. However, Severstal could not find necessary financing in time and the spot was eventually given to Khimki instead.