A letter to Doctor [Samuel] Mather. Occasioned by his disingenuous reflexions upon a certain pamphlet, entitled, Salvation for all men. 1782.
A sermon delivered at the church in Brattle-Street, January 2, 1784 : at the interment of the Rev. Samuel Cooper, D.D. who expired, December 29, 1783.
A discourse, delivered at the First Church in Boston, February 15, 1787. At the interment of the Rev. Charles Chauncy, D.D. A.A.S. Its Senior Pastor, who expired, Feb. 10, 1787.
A discourse delivered before the Humane Society of the Commonwealth of Massachusetts : at the semi-annual meeting, eleventh of June 1793.
An answer to the question, why are you a Christian? (1795)[6]
A discourse, delivered at the First Church in Boston, April 19, 1795, the Lord's-Day after the interment of Nathaniel W. Appleton, M.D. 1796.
Letters to a student in the University of Cambridge, Massachusetts (1796)[7]
Sermons by the late Reverend John Clarke, D.D. Minister of the First Church in Boston, Massachusetts. Boston: Samuel Hall. 1799.