(en) M S Rodriguez, Hernán Ortega et Raphaël Covain, « Intergeneric phylogenetic relationships in catfishes of the Loricariinae (Siluriformes: Loricariidae), with the description of Fonchiiloricaria nanodon: a new genus and species from Peru », Journal of Fish Biology, Wiley-Blackwell, vol. 79, no 4, , p. 875-895 (ISSN0022-1112 et 1095-8649, OCLC1754591, PMID21967579, DOI10.1111/J.1095-8649.2011.03047.X).
(en) Gabriel de Souza da Costa e Silva, Raphaël Covain, Claudio Oliveira et Fábio Fernandes Roxo, « Description of two new species of Lithoxus (Hypostominae: Loricariidae) from rio Jari and rio Amapá basins, Brazilian Guiana Shield », Zootaxa, Magnolia Press (d), vol. 4347, no 1, , p. 151-168 (ISSN1175-5334 et 1175-5326, OCLC49030618, PMID29245612, DOI10.11646/ZOOTAXA.4347.1.9).
(en) Yamila P. Cardoso, Juan J Rosso, Ezequiel Mabragaña, Mariano González-Castro, Matías Delpiani, Esteban Avigliano, Sergio Bogan, Raphaël Covain, Nahuel F. Schenone et Juan M. Díaz de Astarloa, « A continental-wide molecular approach unraveling mtDNA diversity and geographic distribution of the Neotropical genus Hoplias », PLOS One, PLoS, vol. 13, no 8, , e0202024 (ISSN1932-6203, OCLC228234657, PMID30102742, PMCID6089427, DOI10.1371/JOURNAL.PONE.0202024).
(en) Alexandre Lemopoulos et Raphaël Covain, « Biogeography of the freshwater fishes of the Guianas using a partitioned parsimony analysis of endemicity with reappraisal of ecoregional boundaries », Cladistics, Londres, Wiley-Blackwell, vol. 35, no 1, , p. 106-124 (ISSN0748-3007 et 1096-0031, OCLC612102944, DOI10.1111/CLA.12341).
(en) Carlos David de Santana, William G. R. Crampton, Casey B. Dillman, Renata G. Frederico, Mark H. Sabaj Pérez, Raphaël Covain, Jonathan Ready, Jansen Zuanon, Renildo Ribeiro de Oliveira, Raimundo N. Mendes-Júnior, Douglas A. Bastos, Tulio F. Teixeira, Jan H. Mol, Willian Ohara, Natália Castro e Castro, Luiz A. Peixoto, Cleusa Nagamachi, Leandro Sousa, Luciano F. A. Montag, Frank Ribeiro, Joseph C. Waddell, Nivaldo M. Piorsky, Richard Peter Vari et Wolmar Benjamin Wosiacki, « Unexpected species diversity in electric eels with a description of the strongest living bioelectricity generator », Nature Communications, NPG, vol. 10, no 1, , p. 4000 (ISSN2041-1723, OCLC614340895, PMID31506444, PMCID6736962, DOI10.1038/S41467-019-11690-Z).
(en) Fábio F. Roxo, Luz E. Ochoa, Mark H. Sabaj, Nathan K. Lujan, Raphaël Covain, Gabriel S. C. Silva, Bruno F. Melo, James Albert, Jonathan Chang, Fausto Foresti, Michael E. Alfaro et Claudio Oliveira, « Phylogenomic reappraisal of the Neotropical catfish family Loricariidae (Teleostei: Siluriformes) using ultraconserved elements », Molecular Phylogenetics and Evolution, Academic Press et Elsevier, vol. 135, , p. 148-165 (ISSN1055-7903 et 1095-9513, PMID30802595, DOI10.1016/J.YMPEV.2019.02.017).
(en) Luiz Jardim de Queiroz, Yamila Cardoso, Cécile Jacot-des-Combes, Ilham Anne Bahechar, Carlos Alberto Lucena, Lucia Rapp Py-Daniel, Luisa Maria Sarmento Soares, Stephan Nylinder, Claudio Oliveira, Thiago Estevam Parente, Gislene Torrente-Vilara, Raphaël Covain, Paulo Buckup et Juan I. Montoya-Burgos, « Evolutionary units delimitation and continental multilocus phylogeny of the hyperdiverse catfish genus Hypostomus », Molecular Phylogenetics and Evolution, Academic Press et Elsevier, vol. 145, , p. 106711 (ISSN1055-7903 et 1095-9513, PMID31857199, DOI10.1016/J.YMPEV.2019.106711).
(en) David Ory, Yves Cuenot, Régis Vigouroux, Raphaël Covain, Sébastien Brosse et Jérôme Murienne, « Complete mitochondrial genome of the river stingray Potamotrygon orbignyi (Myliobatiformes: Potamotrygonidae) », Mitochondrial DNA. Part B, Resources, Taylor & Francis, vol. 4, no 2, , p. 3153-3154 (ISSN2380-2359, PMID33365895, PMCID7706632, DOI10.1080/23802359.2019.1666683).
Années 2020
(en) Céline Jézéquel, Pablo A. Tedesco, Rémy Bigorne, Javier A. Maldonado-Ocampo, Hernan Ortega, Max Hidalgo, Koen Martens, Gislene Torrente-Vilara, Jansen Zuanon, Astrid Acosta, Edwin Agudelo, Soraya Barrera Maure, Douglas A. Bastos, Juan Bogotá Gregory, Fernando G. Cabeceira, André L. C. Canto, Fernando M. Carvajal-Vallejos, Lucélia N. Carvalho, Ariana Cella-Ribeiro, Raphaël Covain, Carlos DoNascimiento, Carolina R. C. Dória, Cleber Duarte, Efrem J. G. Ferreira, André V. Galuch, Tommaso Giarrizzo, Rafael P. Leitão, John G. Lundberg, Mabel Maldonado, José I. Mojica, Luciano F. A. Montag, Willian M. Ohara, Tiago H. S. Pires, Marc Pouilly, Saúl Prada-Pedreros, Luiz J. de Queiroz, Lucia Rapp Py-Daniel, Frank R. V. Ribeiro, Raúl Ríos Herrera, Jaime Sarmiento, Leandro M. Sousa, Lis F. Stegmann, Jonathan Valdiviezo-Rivera, Francisco Villa, Takayuki Yunoki et Thierry Oberdorff, « A database of freshwater fish species of the Amazon Basin », Scientific Data, Macmillan Publishers et NPG, vol. 7, no 1, , p. 96 (ISSN2052-4463, OCLC880900611, PMID32193422, PMCID7081286, DOI10.1038/S41597-020-0436-4).
(en) Victoria G. Carrington, Yvan Papa, Chelsey M. Beese, Jessica Hall, Raphaël Covain, Peter Horn, Monique A. Ladds et Alice Rogers, « How functionally diverse are fish in the deep? A comparison of fish communities in deep and shallow‐water systems », Diversity and Distributions, Wiley-Blackwell et Wiley, vol. 27, no 7, , p. 1208-1223 (ISSN1366-9516 et 1472-4642, OCLC39848596, DOI10.1111/DDI.13268).
(en) Yvan Papa, Pierre‐Yves Le Bail et Raphaël Covain, « Genetic landscape clustering of a large DNA barcoding data set reveals shared patterns of genetic divergence among freshwater fishes of the Maroni Basin », Molecular Ecology Resources, Wiley-Blackwell, vol. 21, no 6, , p. 2109-2124 (ISSN1755-098X et 1755-0998, DOI10.1111/1755-0998.13402).
(en) Jean‐Marc Roussel, Raphael Covain, Regis Vigouroux, Luc Allard, Anne Treguier, Yvan Papa et Pierre‐Yves Le Bail, « Fish communities critically depend on forest subsidies in small neotropical streams with high biodiversity value », Biotropica, Wiley-Blackwell, vol. 53, no 4, , p. 1096-1108 (ISSN0006-3606 et 1744-7429, OCLC708279941, DOI10.1111/BTP.12949).
(en) Sébastien Brosse, Antoine Baglan, Raphaël Covain, Hadrien Lalagüe, Pierre-Yves Le Bail, Régis Vigouroux et Grégory Quartarollo, « Aquarium trade and fish farms as a source of non-native freshwater fish introductions in French Guiana », Annales de Limnologie, EDP Sciences, vol. 57, , p. 4 (ISSN0003-4088 et 2100-000X, OCLC793456525, DOI10.1051/LIMN/2021002).
(en) Erwan Quéméré, Marie Aucourd, Valérie Troispoux, Sébastien Brosse, Jérôme Murienne, Raphaël Covain, Pierre‐Yves Le Bail, Jean Olivier, Niklas Tysklind et Maxime Galan, « Unraveling the dietary diversity of Neotropical top predators using scat DNA metabarcoding: A case study on the elusive Giant Otter », Environmental DNA, vol. 3, no 5, , p. 889-900 (ISSN2637-4943, DOI10.1002/EDN3.195).