Variational autoencoder

The basic scheme of a variational autoencoder. The model receives ${\displaystyle x}$ as input. The encoder compresses it into the latent space. The decoder receives as input the information sampled from the latent space and produces ${\displaystyle {x'}}$ as similar as possible to ${\displaystyle x}$.

In machine learning, a variational autoencoder (VAE) is an artificial neural network architecture introduced by Diederik P. Kingma and Max Welling.[1] It is part of the families of probabilistic graphical models and variational Bayesian methods.[2]

In addition to being seen as an autoencoder neural network architecture, variational autoencoders can also be studied within the mathematical formulation of variational Bayesian methods, connecting a neural encoder network to its decoder through a probabilistic latent space (for example, as a multivariate Gaussian distribution) that corresponds to the parameters of a variational distribution.

Thus, the encoder maps each point (such as an image) from a large complex dataset into a distribution within the latent space, rather than to a single point in that space. The decoder has the opposite function, which is to map from the latent space to the input space, again according to a distribution (although in practice, noise is rarely added during the decoding stage). By mapping a point to a distribution instead of a single point, the network can avoid overfitting the training data. Both networks are typically trained together with the usage of the reparameterization trick, although the variance of the noise model can be learned separately.^[citation needed]

Although this type of model was initially designed for unsupervised learning,[3][4] its effectiveness has been proven for semi-supervised learning[5][6] and supervised learning.[7]

Overview of architecture and operation

A variational autoencoder is a generative model with a prior and noise distribution respectively. Usually such models are trained using the expectation-maximization meta-algorithm (e.g. probabilistic PCA, (spike & slab) sparse coding). Such a scheme optimizes a lower bound of the data likelihood, which is usually intractable, and in doing so requires the discovery of q-distributions, or variational posteriors. These q-distributions are normally parameterized for each individual data point in a separate optimization process. However, variational autoencoders use a neural network as an amortized approach to jointly optimize across data points. This neural network takes as input the data points themselves, and outputs parameters for the variational distribution. As it maps from a known input space to the low-dimensional latent space, it is called the encoder.

The decoder is the second neural network of this model. It is a function that maps from the latent space to the input space, e.g. as the means of the noise distribution. It is possible to use another neural network that maps to the variance, however this can be omitted for simplicity. In such a case, the variance can be optimized with gradient descent.

To optimize this model, one needs to know two terms: the "reconstruction error", and the Kullback–Leibler divergence (KL-D). Both terms are derived from the free energy expression of the probabilistic model, and therefore differ depending on the noise distribution and the assumed prior of the data. For example, a standard VAE task such as IMAGENET is typically assumed to have a gaussianly distributed noise; however, tasks such as binarized MNIST require a Bernoulli noise. The KL-D from the free energy expression maximizes the probability mass of the q-distribution that overlaps with the p-distribution, which unfortunately can result in mode-seeking behaviour. The "reconstruction" term is the remainder of the free energy expression, and requires a sampling approximation to compute its expectation value.[8]

More recent approaches replace Kullback–Leibler divergence (KL-D) with various statistical distances, see see section "Statistical distance VAE variants" below..

Formulation

From the point of view of probabilistic modeling, one wants to maximize the likelihood of the data ${\displaystyle x}$ by their chosen parameterized probability distribution ${\displaystyle p_{\theta }(x)=p(x|\theta )}$. This distribution is usually chosen to be a Gaussian ${\displaystyle N(x|\mu ,\sigma )}$ which is parameterized by ${\displaystyle \mu }$ and ${\displaystyle \sigma }$ respectively, and as a member of the exponential family it is easy to work with as a noise distribution. Simple distributions are easy enough to maximize, however distributions where a prior is assumed over the latents ${\displaystyle z}$ results in intractable integrals. Let us find ${\displaystyle p_{\theta }(x)}$ via marginalizing over ${\displaystyle z}$.

${\displaystyle p_{\theta }(x)=\int _{z}p_{\theta }({x,z})\,dz,}$

where ${\displaystyle p_{\theta }({x,z})}$ represents the joint distribution under ${\displaystyle p_{\theta }}$ of the observable data ${\displaystyle x}$ and its latent representation or encoding ${\displaystyle z}$. According to the chain rule, the equation can be rewritten as

${\displaystyle p_{\theta }(x)=\int _{z}p_{\theta }({x|z})p_{\theta }(z)\,dz}$

In the vanilla variational autoencoder, ${\displaystyle z}$ is usually taken to be a finite-dimensional vector of real numbers, and ${\displaystyle p_{\theta }({x|z})}$ to be a Gaussian distribution. Then ${\displaystyle p_{\theta }(x)}$ is a mixture of Gaussian distributions.

It is now possible to define the set of the relationships between the input data and its latent representation as

• Prior ${\displaystyle p_{\theta }(z)}$
• Likelihood ${\displaystyle p_{\theta }(x|z)}$
• Posterior ${\displaystyle p_{\theta }(z|x)}$

Unfortunately, the computation of ${\displaystyle p_{\theta }(z|x)}$ is expensive and in most cases intractable. To speed up the calculus to make it feasible, it is necessary to introduce a further function to approximate the posterior distribution as

${\displaystyle q_{\phi }({z|x})\approx p_{\theta }({z|x})}$

with ${\displaystyle \phi }$ defined as the set of real values that parametrize ${\displaystyle q}$. This is sometimes called amortized inference, since by "investing" in finding a good ${\displaystyle q_{\phi }}$, one can later infer ${\displaystyle z}$ from ${\displaystyle x}$ quickly without doing any integrals.

In this way, the problem is to find a good probabilistic autoencoder, in which the conditional likelihood distribution ${\displaystyle p_{\theta }(x|z)}$ is computed by the probabilistic decoder, and the approximated posterior distribution ${\displaystyle q_{\phi }(z|x)}$ is computed by the probabilistic encoder.

Parametrize the encoder as ${\displaystyle E_{\phi }}$, and the decoder as ${\displaystyle D_{\theta }}$.

Evidence lower bound (ELBO)

Main article: Evidence lower bound

Like many deep learning implementations, training typically uses a differentiable loss function and backpropagation.

For variational autoencoders, the idea is to jointly optimize the generative model parameters ${\displaystyle \theta }$ to reduce the reconstruction error between the input and the output, and ${\displaystyle \phi }$ to make ${\displaystyle q_{\phi }({z|x})}$ as close as possible to ${\displaystyle p_{\theta }(z|x)}$. As reconstruction loss, mean squared error and cross entropy are often used.

As distance loss between the two distributions the Kullback–Leibler divergence ${\displaystyle D_{KL}(q_{\phi }({z|x})\parallel p_{\theta }({z|x}))}$ is a good choice to squeeze ${\displaystyle q_{\phi }({z|x})}$ under ${\displaystyle p_{\theta }(z|x)}$.[8][9]

The distance loss just defined is expanded as

${\displaystyle {\begin{aligned}D_{KL}(q_{\phi }({z|x})\parallel p_{\theta }({z|x}))&=\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {q_{\phi }(z|x)}{p_{\theta }(z|x)}}\right]\\&=\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {q_{\phi }({z|x})p_{\theta }(x)}{p_{\theta }(x,z)}}\right]\\&=\ln p_{\theta }(x)+\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {q_{\phi }({z|x})}{p_{\theta }(x,z)}}\right]\end{aligned}}}$

Now define the evidence lower bound (ELBO):$${\displaystyle L_{\theta ,\phi }(x):=\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {p_{\theta }(x,z)}{q_{\phi }({z|x})}}\right]=\ln p_{\theta }(x)-D_{KL}(q_{\phi }({\cdot |x})\parallel p_{\theta }({\cdot |x}))}$$Maximizing the ELBO$${\displaystyle \theta ^{*},\phi ^{*}={\underset {\theta ,\phi }{\operatorname {argmax} }}\,L_{\theta ,\phi }(x)}$$is equivalent to simultaneously maximizing ${\displaystyle \ln p_{\theta }(x)}$ and minimizing ${\displaystyle D_{KL}(q_{\phi }({z|x})\parallel p_{\theta }({z|x}))}$. That is, maximizing the log-likelihood of the observed data, and minimizing the divergence of the approximate posterior ${\displaystyle q_{\phi }(\cdot |x)}$ from the exact posterior ${\displaystyle p_{\theta }(\cdot |x)}$.

The form given is not very convenient for maximization, but the following, equivalent form, is:$${\displaystyle L_{\theta ,\phi }(x)=\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln p_{\theta }(x|z)\right]-D_{KL}(q_{\phi }({\cdot |x})\parallel p_{\theta }(\cdot ))}$$where ${\displaystyle \ln p_{\theta }(x|z)}$ is implemented as ${\displaystyle -{\frac {1}{2}}\|x-D_{\theta }(z)\|_{2}^{2}}$, since that is, up to an additive constant, what ${\displaystyle x\sim {\mathcal {N}}(D_{\theta }(z),I)}$ yields. That is, we model the distribution of ${\displaystyle x}$ conditional on ${\displaystyle z}$ to be a Gaussian distribution centered on ${\displaystyle D_{\theta }(z)}$. The distribution of ${\displaystyle q_{\phi }(z|x)}$ and ${\displaystyle p_{\theta }(z)}$ are often also chosen to be Gaussians as ${\displaystyle z|x\sim {\mathcal {N}}(E_{\phi }(x),\sigma _{\phi }(x)^{2}I)}$ and ${\displaystyle z\sim {\mathcal {N}}(0,I)}$, with which we obtain by the formula for KL divergence of Gaussians:$${\displaystyle L_{\theta ,\phi }(x)=-{\frac {1}{2}}\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\|x-D_{\theta }(z)\|_{2}^{2}\right]-{\frac {1}{2}}\left(N\sigma _{\phi }(x)^{2}+\|E_{\phi }(x)\|_{2}^{2}-2N\ln \sigma _{\phi }(x)\right)+Const}$$Here ${\displaystyle N}$ is the dimension of ${\displaystyle z}$. For a more detailed derivation and more interpretations of ELBO and its maximization, see its main page.

Reparameterization

The scheme of the reparameterization trick. The randomness variable ${\displaystyle {\varepsilon }}$ is injected into the latent space ${\displaystyle z}$ as external input. In this way, it is possible to backpropagate the gradient without involving stochastic variable during the update.

To efficiently search for $${\displaystyle \theta ^{*},\phi ^{*}={\underset {\theta ,\phi }{\operatorname {argmax} }}\,L_{\theta ,\phi }(x)}$$the typical method is gradient ascent.

It is straightforward to find$${\displaystyle \nabla _{\theta }\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {p_{\theta }(x,z)}{q_{\phi }({z|x})}}\right]=\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\nabla _{\theta }\ln {\frac {p_{\theta }(x,z)}{q_{\phi }({z|x})}}\right]}$$However, $${\displaystyle \nabla _{\phi }\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {p_{\theta }(x,z)}{q_{\phi }({z|x})}}\right]}$$does not allow one to put the ${\displaystyle \nabla _{\phi }}$ inside the expectation, since ${\displaystyle \phi }$ appears in the probability distribution itself. The reparameterization trick (also known as stochastic backpropagation[10]) bypasses this difficulty.[8][11][12]

The most important example is when ${\displaystyle z\sim q_{\phi }(\cdot |x)}$ is normally distributed, as ${\displaystyle {\mathcal {N}}(\mu _{\phi }(x),\Sigma _{\phi }(x))}$.

The scheme of a variational autoencoder after the reparameterization trick

This can be reparametrized by letting ${\displaystyle {\boldsymbol {\varepsilon }}\sim {\mathcal {N}}(0,{\boldsymbol {I}})}$ be a "standard random number generator", and construct ${\displaystyle z}$ as ${\displaystyle z=\mu _{\phi }(x)+L_{\phi }(x)\epsilon }$. Here, ${\displaystyle L_{\phi }(x)}$ is obtained by the Cholesky decomposition:$${\displaystyle \Sigma _{\phi }(x)=L_{\phi }(x)L_{\phi }(x)^{T}}$$Then we have$${\displaystyle \nabla _{\phi }\mathbb {E} _{z\sim q_{\phi }(\cdot |x)}\left[\ln {\frac {p_{\theta }(x,z)}{q_{\phi }({z|x})}}\right]=\mathbb {E} _{\epsilon }\left[\nabla _{\phi }\ln {\frac {p_{\theta }(x,\mu _{\phi }(x)+L_{\phi }(x)\epsilon )}{q_{\phi }(\mu _{\phi }(x)+L_{\phi }(x)\epsilon |x)}}\right]}$$and so we obtained an unbiased estimator of the gradient, allowing stochastic gradient descent.

Since we reparametrized ${\displaystyle z}$, we need to find ${\displaystyle q_{\phi }(z|x)}$. Let ${\displaystyle q_{0}}$ be the probability density function for ${\displaystyle \epsilon }$, then ^[clarification needed]$${\displaystyle \ln q_{\phi }(z|x)=\ln q_{0}(\epsilon )-\ln |\det(\partial _{\epsilon }z)|}$$where ${\displaystyle \partial _{\epsilon }z}$ is the Jacobian matrix of ${\displaystyle \epsilon }$ with respect to ${\displaystyle z}$. Since ${\displaystyle z=\mu _{\phi }(x)+L_{\phi }(x)\epsilon }$, this is $${\displaystyle \ln q_{\phi }(z|x)=-{\frac {1}{2}}\|\epsilon \|^{2}-\ln |\det L_{\phi }(x)|-{\frac {n}{2}}\ln(2\pi )}$$

Variations

Many variational autoencoders applications and extensions have been used to adapt the architecture to other domains and improve its performance.

${\displaystyle \beta }$-VAE is an implementation with a weighted Kullback–Leibler divergence term to automatically discover and interpret factorised latent representations. With this implementation, it is possible to force manifold disentanglement for ${\displaystyle \beta }$ values greater than one. This architecture can discover disentangled latent factors without supervision.[13][14]

The conditional VAE (CVAE), inserts label information in the latent space to force a deterministic constrained representation of the learned data.[15]

Some structures directly deal with the quality of the generated samples[16][17] or implement more than one latent space to further improve the representation learning.

Some architectures mix VAE and generative adversarial networks to obtain hybrid models.[18][19][20]

Statistical distance VAE variants

After the initial work of Diederik P. Kingma and Max Welling.[21] several procedures were proposed to formulate in a more abstract way the operation of the VAE. In these approaches the loss function is composed of two parts :

• the usual reconstruction error part which seeks to ensure that the encoder-then-decoder mapping ${\displaystyle x\mapsto D_{\theta }(E_{\psi }(x))}$ is as close to the identity map as possible; the sampling is done at run time from the empirical distribution ${\displaystyle \mathbb {P} ^{real}}$ of objects available (e.g., for MNIST or IMAGENET this will be the empirical probability law of all images in the dataset). This gives the term: ${\displaystyle \mathbb {E} _{x\sim \mathbb {P} ^{real}}\left[\|x-D_{\theta }(E_{\phi }(x))\|_{2}^{2}\right]}$.
• a variational part that ensures that, when the empirical distribution ${\displaystyle \mathbb {P} ^{real}}$ is passed through the encoder ${\displaystyle E_{\phi }}$, we recover the target distribution, denoted here ${\displaystyle \mu (dz)}$ that is usually taken to be a Multivariate normal distribution. We will denote ${\displaystyle E_{\phi }\sharp \mathbb {P} ^{real}}$ this pushforward measure which in practice is just the empirical distribution obtained by passing all dataset objects through the encoder ${\displaystyle E_{\phi }}$. In order to make sure that ${\displaystyle E_{\phi }\sharp \mathbb {P} ^{real}}$ is close to the target ${\displaystyle \mu (dz)}$, a Statistical distance ${\displaystyle d}$ is invoked and the term ${\displaystyle d\left(\mu (dz),E_{\phi }\sharp \mathbb {P} ^{real}\right)^{2}}$ is added to the loss.

We obtain the final formula for the loss: $${\displaystyle L_{\theta ,\phi }=\mathbb {E} _{x\sim \mathbb {P} ^{real}}\left[\|x-D_{\theta }(E_{\phi }(x))\|_{2}^{2}\right]+d\left(\mu (dz),E_{\phi }\sharp \mathbb {P} ^{real}\right)^{2}}$$

The statistical distance ${\displaystyle d}$ requires special properties, for instance is has to be posses a formula as expectation because the loss function will need to be optimized by stochastic optimization algorithms. Several distances can be chosen and this gave rise to several flavors of VAEs:

• the sliced Wasserstein distance used by S Kolouri, et al. in their VAE[22]
• the energy distance implemented in the Radon Sobolev Variational Auto-Encoder[23]
• the Maximum Mean Discrepancy distance used in the MMD-VAE[24]
• the Wasserstein distance used in the WAEs[25]
• kernel-based distances used in the Kernelized Variational Autoencoder (K-VAE)[26]

See also

• Autoencoder
• Artificial neural network
• Deep learning
• Generative adversarial network
• Representation learning
• Sparse dictionary learning
• Data augmentation
• Backpropagation

References

1. Kingma, Diederik P.; Welling, Max (2022-12-10). "Auto-Encoding Variational Bayes". arXiv:1312.6114 [stat.ML].
2. Pinheiro Cinelli, Lucas; et al. (2021). "Variational Autoencoder". Variational Methods for Machine Learning with Applications to Deep Networks. Springer. pp. 111–149. doi:10.1007/978-3-030-70679-1_5. ISBN 978-3-030-70681-4. S2CID 240802776.
3. Dilokthanakul, Nat; Mediano, Pedro A. M.; Garnelo, Marta; Lee, Matthew C. H.; Salimbeni, Hugh; Arulkumaran, Kai; Shanahan, Murray (2017-01-13). "Deep Unsupervised Clustering with Gaussian Mixture Variational Autoencoders". arXiv:1611.02648 [cs.LG].
4. Hsu, Wei-Ning; Zhang, Yu; Glass, James (December 2017). "Unsupervised domain adaptation for robust speech recognition via variational autoencoder-based data augmentation". 2017 IEEE Automatic Speech Recognition and Understanding Workshop (ASRU). pp. 16–23. arXiv:1707.06265. doi:10.1109/ASRU.2017.8268911. ISBN 978-1-5090-4788-8. S2CID 22681625.
5. Ehsan Abbasnejad, M.; Dick, Anthony; van den Hengel, Anton (2017). Infinite Variational Autoencoder for Semi-Supervised Learning. pp. 5888–5897.
6. Xu, Weidi; Sun, Haoze; Deng, Chao; Tan, Ying (2017-02-12). "Variational Autoencoder for Semi-Supervised Text Classification". Proceedings of the AAAI Conference on Artificial Intelligence. 31 (1). doi:10.1609/aaai.v31i1.10966. S2CID 2060721.
7. Kameoka, Hirokazu; Li, Li; Inoue, Shota; Makino, Shoji (2019-09-01). "Supervised Determined Source Separation with Multichannel Variational Autoencoder". Neural Computation. 31 (9): 1891–1914. doi:10.1162/neco_a_01217. PMID 31335290. S2CID 198168155.
8. Kingma, Diederik P.; Welling, Max (2013-12-20). "Auto-Encoding Variational Bayes". arXiv:1312.6114 [stat.ML].
9. "From Autoencoder to Beta-VAE". Lil'Log. 2018-08-12.
10. Rezende, Danilo Jimenez; Mohamed, Shakir; Wierstra, Daan (2014-06-18). "Stochastic Backpropagation and Approximate Inference in Deep Generative Models". International Conference on Machine Learning. PMLR: 1278–1286. arXiv:1401.4082.
11. Bengio, Yoshua; Courville, Aaron; Vincent, Pascal (2013). "Representation Learning: A Review and New Perspectives". IEEE Transactions on Pattern Analysis and Machine Intelligence. 35 (8): 1798–1828. arXiv:1206.5538. doi:10.1109/TPAMI.2013.50. ISSN 1939-3539. PMID 23787338. S2CID 393948.
12. Kingma, Diederik P.; Rezende, Danilo J.; Mohamed, Shakir; Welling, Max (2014-10-31). "Semi-Supervised Learning with Deep Generative Models". arXiv:1406.5298 [cs.LG].
13. Higgins, Irina; Matthey, Loic; Pal, Arka; Burgess, Christopher; Glorot, Xavier; Botvinick, Matthew; Mohamed, Shakir; Lerchner, Alexander (2016-11-04). beta-VAE: Learning Basic Visual Concepts with a Constrained Variational Framework. NeurIPS.
14. Burgess, Christopher P.; Higgins, Irina; Pal, Arka; Matthey, Loic; Watters, Nick; Desjardins, Guillaume; Lerchner, Alexander (2018-04-10). "Understanding disentangling in β-VAE". arXiv:1804.03599 [stat.ML].
15. Sohn, Kihyuk; Lee, Honglak; Yan, Xinchen (2015-01-01). Learning Structured Output Representation using Deep Conditional Generative Models (PDF). NeurIPS.
16. Dai, Bin; Wipf, David (2019-10-30). "Diagnosing and Enhancing VAE Models". arXiv:1903.05789 [cs.LG].
17. Dorta, Garoe; Vicente, Sara; Agapito, Lourdes; Campbell, Neill D. F.; Simpson, Ivor (2018-07-31). "Training VAEs Under Structured Residuals". arXiv:1804.01050 [stat.ML].
18. Larsen, Anders Boesen Lindbo; Sønderby, Søren Kaae; Larochelle, Hugo; Winther, Ole (2016-06-11). "Autoencoding beyond pixels using a learned similarity metric". International Conference on Machine Learning. PMLR: 1558–1566. arXiv:1512.09300.
19. Bao, Jianmin; Chen, Dong; Wen, Fang; Li, Houqiang; Hua, Gang (2017). "CVAE-GAN: Fine-Grained Image Generation Through Asymmetric Training". pp. 2745–2754. arXiv:1703.10155 [cs.CV].
20. Gao, Rui; Hou, Xingsong; Qin, Jie; Chen, Jiaxin; Liu, Li; Zhu, Fan; Zhang, Zhao; Shao, Ling (2020). "Zero-VAE-GAN: Generating Unseen Features for Generalized and Transductive Zero-Shot Learning". IEEE Transactions on Image Processing. 29: 3665–3680. Bibcode:2020ITIP...29.3665G. doi:10.1109/TIP.2020.2964429. ISSN 1941-0042. PMID 31940538. S2CID 210334032.
21. Kingma, Diederik P.; Welling, Max (2022-12-10). "Auto-Encoding Variational Bayes". arXiv:1312.6114 [stat.ML].
22. Kolouri, Soheil; Pope, Phillip E.; Martin, Charles E.; Rohde, Gustavo K. (2019). "Sliced Wasserstein Auto-Encoders". International Conference on Learning Representations. International Conference on Learning Representations. ICPR.
23. Turinici, Gabriel (2021). "Radon-Sobolev Variational Auto-Encoders". Neural Networks. 141: 294–305. arXiv:1911.13135. doi:10.1016/j.neunet.2021.04.018. ISSN 0893-6080. PMID 33933889.
24. Gretton, A.; Li, Y.; Swersky, K.; Zemel, R.; Turner, R. (2017). "A Polya Contagion Model for Networks". IEEE Transactions on Control of Network Systems. 5 (4): 1998–2010. arXiv:1705.02239. doi:10.1109/TCNS.2017.2781467.
25. Tolstikhin, I.; Bousquet, O.; Gelly, S.; Schölkopf, B. (2018). "Wasserstein Auto-Encoders". arXiv:1711.01558 [stat.ML].
26. Louizos, C.; Shi, X.; Swersky, K.; Li, Y.; Welling, M. (2019). "Kernelized Variational Autoencoders". arXiv:1901.02401 [astro-ph.CO].

Further reading

• Kingma, Diederik P.; Welling, Max (2019). "An Introduction to Variational Autoencoders". Foundations and Trends in Machine Learning. 12 (4). Now Publishers: 307–392. arXiv:1906.02691. doi:10.1561/2200000056. ISSN 1935-8237.