During and after his tenure, suspicions of graft and fraudulent contracts for roadworks came up. In 1910, he was indicted on 17 counts of grand larceny in office. At his trial for one of the indictments he was defended by William Travers Jerome. Skene was acquitted by the jury, and his accuser Charles H. O'Neil, who had been his Confidential Assistant, was arrested on charges of perjury.[4] The other 16 indictments were quashed in 1912.
^"Dorothy Skene A Bride. Married in Garden of Summer Home to Dr. James Page". New York Times. September 4, 1938. Retrieved 2012-10-16. Miss Dorothy Margaret Skene, daughter of Dean and Mrs. Frederick Skene of New York and East Chop, near here, was married to Dr. James D. Page of the University of Rochester at the Summer home of the bride's parents in the East Chop Summer colony this afternoon. (subscription required)
^ ab"Frederick Skene". Political Graveyard. Retrieved 2012-10-16. Skene, Frederick — of Long Island City, Queens, Queens County, N.Y. New York state engineer and surveyor, 1907-08