^FC Volyn Lutsk was docked three tournament points in accordance with the decision of the Bureau of PFL of 15 April 2008.
^MFK Mykolaiv informed the PFL season on 26 June 2008 that the City Administration of Mykolaiv will not be financing the team in the 2008/09 season. On 1 July 2008 the team was dissolved. On 17 July 2008 the club reapplies to the PFL and are readmitted into Druha Liha Group A for the 2008-09 season.
^ abFC Podillya-Khmelnytskyi, FC Nyva-Svitanok Vinnytsia, FC Korosten and FC Arsenal Bila Tserkva enter the competition.
^FC Dynamo-3 Kyiv withdrew out of courtesy before the start of the next season to allow MFK Mykolaiv to enter the competition.
^FC Enerhiya Yuzhnoukrainsk withdrew from the PFL at the end of the season citing financial difficulties. However, the team indicated that they will return to the PFL in the 2009-10 season.[4] They did not hold to their promise.
^FC Naftovyk Dolyna withdrew after the first half of the season. Technical victories were awarded to their opponents in the second half of the season.[5]
^ abcFC Olimpik Kirovohrad, FC Poltava, FC Shakhtar Sverdlovsk, FC Komunalnyk Luhansk and FC Titan Donetsk enter the competition.
^FC Hazovyk-KhGV Kharkiv withdrew after the first half of the season. Technical victories were awarded to their opponents in the second half of the season.[6]