Stephen Altschul

Stephen Altschul
Born
Stephen Frank Altschul

(1957-02-28) February 28, 1957 (age 67)
CitizenshipUnited States
Alma materHarvard University (A.B., Mathematics)
Massachusetts Institute of Technology (Ph.D., Mathematics)
Known forBLAST
SpouseCaroline Kershaw James (m. 1994)
Scientific career
FieldsBioinformatics
InstitutionsNCBI
ThesisAspects of Biological Sequence Comparison (1987)
Doctoral advisorDaniel Kleitman[1]
Websitewww.ncbi.nlm.nih.gov/research/staff/altschul

Stephen Frank Altschul (born February 28, 1957) is an American mathematician who has designed algorithms that are used in the field of bioinformatics (the Karlin–Altschul algorithm[2] and its successors[3]). Altschul is the co-author of the BLAST algorithm used for sequence analysis of proteins and nucleotides.[4][5]

Education

Altschul graduated summa cum laude[6] from Harvard University, where he was elected to Phi Beta Kappa in mathematics and has a Ph.D. in the same field from Massachusetts Institute of Technology.[7]

Research

His research interest centers around sequence-alignment algorithms, statistics of sequence comparison, and measurement of sequence similarity.[4][5]

Background

He is the son of Stephanie Rosemary (née Wagner) and Arthur Altschul, a former partner at Goldman Sachs.[8][9] In 1994, he married Caroline Kershaw James, the daughter of Caroline James-Pritz of Cincinnati and Harry Keithan James of Dayton, Ohio. The Rev. Luther D. Miller Jr. performed the ceremony at St. David's Episcopal Church in Washington.[6]

His half-sister is journalist Serena Altschul, who is known for her tenure at MTV. On his father's side, he is a member of the Lehman family.

He has two sons, James and William Altschul. William Altschul is a former college Ultimate player at Washington University in St. Louis.[10]

From mathematics to bioinformatics

During his undergraduate years, Altschul developed an interest in biology. As a result, he started reading books about DNA. One of the books that he read was The Double Helix by Watson.[citation needed] Furthermore, he had also taken a course on Evolutionary Biology.[citation needed] Altschul had also spent two summers working in laboratories at Rockfeller University where he helped to write computer codes for an X-ray crystallography project.[citation needed]

Due to his interest, Altschul had considered trying to apply to graduate school in biology.[citation needed] He instead decided to apply to programs in applied mathematics, with the hope of finding some applications of mathematics to biology to work on.

Notable appointments/positions held

Upon graduation, Stephen Frank Altschul worked in the Mathematics Research Branch of the National Institute of Diabetes and Digestive and Kidney Diseases as an IRTA postdoctoral fellowship. From 1990 to present, he has worked in the NCBI Computational Biology Branch, holding the position of senior investigator.

References

  1. ^ Stephen Altschul at the Mathematics Genealogy Project
  2. ^ Altschul, S.; Gish, W.; Miller, W.; Myers, E.; Lipman, D. (1990). "Basic Local Alignment Search Tool". Journal of Molecular Biology. 215 (3): 403–410. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712. S2CID 14441902.
  3. ^ Altschul, S.; Madden, T. L.; Schäffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. (1997). "Gapped BLAST and PSI-BLAST: A new generation of protein database search programs". Nucleic Acids Research. 25 (17): 3389–3402. doi:10.1093/nar/25.17.3389. PMC 146917. PMID 9254694.
  4. ^ a b Stephen Altschul publications indexed by Microsoft Academic
  5. ^ a b Stephen F. Altschul at DBLP Bibliography Server Edit this at Wikidata
  6. ^ a b New York Times: "Weddings; Caroline James, Stephen Altschul" April 17, 1994
  7. ^ Altschul, Stephen Frank (1987). Aspects of Biological Sequence Comparison (PhD thesis). Massachusetts Institute of Technology.
  8. ^ Death notice of Arthur Goodhart Altschul
  9. ^ "TROTA ANNOUNCED OF MISS WAGNER; To Be Wed in May - The New York Times". The New York Times. 18 March 1956.
  10. ^ "Event Team | Play USA Ultimate".